UIC
 

bbTM-ST
β-Barrel TransMembrane Search Tool

 

BLAST searches using the bbTM scoring matrices against the NR-NCBI database.

 

>Transmembrane fragment search for structures of beta barrel membrane proteins with a solved structure using the bbTMout matrix:

 

>Transmembrane fragment search for human mitochondrial beta-barrel membrane proteins:

 

> Provide your own transmembrane segment.
Minimal sequence length: 20 amino acids. FASTA format required. Example of FASTA format:

>name of the sequence
AMINQACIDSEQAENCETRANSMEMIRANESEGMENTS


Fasta formatted file uploaded: please be patient while BLAST runs