University of Illinos at Chicago
PreLysCar
Predictor of Lysine Carboxylation

Computational tool for the prediction of lysine carboxylation.

> Input: protein 3D coordinates in PDB format.
> Output: lysine(s) residue(s) predicted as carboxylated.

INPUT DATA

Protein 3D coordinates (PDB format):

Choose a probability:    Help How to choose the prior probability
> A prior of 0.5 represents that the carboxylation of lysine would have the same probability than a normal lysine, which might result in more false positives (lysines incorrectly predicted as carboxylated).
>A prior of 0.0001 represents the opposite and less false positives should be expected
Our results with the training data set showed that 0.009 gave the best performance.